Animal Genome Data Resources
- Maps: [ NCBI (Cattle, Chicken, Horse, Pig, Sheep); Ensembl (Cattle, Chicken, Horse, Pig, Sheep); ARKDB (Chick,Cow,Horse,Pig,Salmon,Sheep,Turkey); INRA (Cattle, Pigs); RH (Cattle, Pigs, Chicken, Sheep) ]
- EST: [ Cattle, Pig, Chicken ] QTL: [ Cattle, Pig, Chicken, Sheep ]
- BAC contig: [ Cattle, Chicken, Pigs, Sheep ]
- SNP Chips: [ Cattle | Pig | Sheep | SNPchimp ]
- HapMap: [ Cattle | Pig | Sheep ]
- Genes: [ OMIA, TGI, Unigen, SIGENAE, miRNAdb, miROtho, OrthoDB ]
- Genomes: [ Chicken, Cattle, Pigs, Sheep, Horse ]
- NAGRP Data Repository: for all livestock species
- Open source tools: BioPerl | BioJava | BioXML | OpenBio
- Database tools: GMod | GBrowse | cMAP | BioMOBY |
- Data centers: NCBI | Ensembl | UCSC | DBGET
- Ontology: GO | MPO | SO | OBO | BioOntology | Matching
- Functional genomics: BioGPS | ExPASy | GeneCards | HGNC | VGNC | MIBBI | KEGG | Reactom | IONH pathways | DGIL Porcine Translational DB
- Metabolism: BRENDA | BioCyc | MetaCyc
- Text mining: eGIFT |
- Traits/phenotypes: CTC | VT | LPT | CMO | Phenotypes
- Interest groups: AgBioData | BioCurators | FAANG
- NCBI Resources: [ Pig | Cattle | Chicken | Sheep | Horses ]
- Structure: Members and responsibility
- Mission: Challenges and tasks.
- Projects: The Past, the Current, and the Potentials
- Services: Computers and Service Resources
- Community: Communication channels
- Publications: Abstracts and Papers
- Updates: NRSP-8 Bioinformatics Reports/Newsletters
- Events: Conferences, Meetings & Workshops
- News: Google | BioInform | NCBI | USDA | NAGRP
- AnGenMap: Animal Genomics Discussion Group
- Directory: Animal Genetics Community Members
- NRSP-8: USDA-NIFA | The Structure | The Community
- Community Groups: Web sites and communications
- Activities: USDA/NRSP8 Bioinformatics Workshops
- Resources Links: Bioinformatics | Animal Genomics
- Services: ( CorrDB | QTLdb | GBrowse | JBrowse )
- Service developments: Databases and Web Sites
- [ Data Repository ] [ Tools Repository ]
- ToolBox | NAGRP Data Sharing Platform
- Ontologies ( VT | LPT | CMO | LBO )
- Starred tools: AgBase | Blast | FAANG Data Portal | ResSpecies | VCMap
- An introductory list of animal genomics software
- Collections: Genetics Software | Genomics Software
- Useful Bookmarks | Genomics Methods References
- Tutorials: how to use [ NCBI] [Ensembl ]
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